PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029284m
Common NameCICLE_v10029284mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 209aa    MW: 22796.7 Da    PI: 6.4922
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029284mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.3e-07433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e+  ++lfC  ++  lC++C ++ H
  Ciclev10029284m  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                     7**************************998 PP

2zf-B_box28.43.3e-095291237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  Ciclev10029284m 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGgkrtH 91
                     5799****************************96555556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
CDDcd000214.38E-7345No hitNo description
PfamPF006434.3E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003365.4E-115196IPR000315B-box-type zinc finger
PfamPF006435.0E-75291IPR000315B-box-type zinc finger
CDDcd000211.62E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MTVHVGGKRT HGRYLLLRQR VEFPGDKAGR LEELALQSLD  120
QNKITRDQTQ PFRITARENQ QNHRGSPVPM LDGNADGDGK VDNKLIDLNA RPNRGQASNN  180
QGMDVLSGTN HDSAGVVPVG SFKREPEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423480.11e-154hypothetical protein CICLE_v10029284mg
RefseqXP_006487374.11e-154PREDICTED: B-box zinc finger protein 19
RefseqXP_006487375.11e-154PREDICTED: B-box zinc finger protein 19
SwissprotC0SVM59e-89BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A067EG401e-154A0A067EG40_CITSI; Uncharacterized protein
TrEMBLV4SD421e-154V4SD42_9R
STRINGVIT_03s0038g00690.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-90DBB family protein